EDP Sciences logo
Authentification abonné
rechercher
Menu
Accueil Tous les numéros Volume 211 / Numéro 1 (2017) Biologie Aujourd'hui, 211 1 (2017) 39-49 Références
Accès gratuit
Numéro
Biologie Aujourd'hui
Volume 211, Numéro 1, 2017
Page(s) 39 - 49
Section Microbiote intestinal et santé (Journée Claude Bernard 2016)
DOI https://doi.org/10.1051/jbio/2017010
Publié en ligne 6 juillet 2017
  • Abrahamsson T.R., Jakobsson H.E., Andersson A.F., Björkstén B., Engstrand L., Jenmalm M.C. (2014) Low gut microbiote diversity in early infancy precedes asthma at school age. Clin Exp Allergy, 44, 842–850. [CrossRef] [PubMed] [Google Scholar]
  • Angelberger S., Reinisch W., Makristathis A., Lichtenberger C., Dejaco C., Papay P., Novacek G., Trauner M., Loy A., Berry D. (2013) Temporal bacterial community dynamics vary among ulcerative colitis patients after fecal microbiote transplantation. Am J Gastroenterol, 108, 1620–1630. [Google Scholar]
  • Atarashi K., Tanoue T., Ando M., Kamada N., Nagano Y., Narushima S., Suda W., Imaoka A., Setoyama H., Nagamori T., Ishikawa E., Shima T., Hara T., Kado S., Jinnohara T., Ohno H., Kondo T., Toyooka K., Watanabe E., Yokoyama S., Tokoro S., Mori H., Noguchi Y., Morita H., Ivanov I.I., Sugiyama T., Nuñez G., Camp J.G., Hattori M., Umesaki Y., Honda K. (2015) Th17 cell induction by adhesion of microbes to intestinal epithelial cells. Cell, 163, 367–380. [CrossRef] [PubMed] [Google Scholar]
  • Benson A.K., Kelly S.A., Legge R., Ma F., Low S.J., Kim J., Zhang M., Oh P.L., Nehrenberg D., Hua K., Kachman S.D., Moriyama E.N., Walter J., Peterson D.A., Pomp D. (2010) Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc Natl Acad Sci USA, 107, 18933–18938. [CrossRef] [Google Scholar]
  • Blekhman R., Goodrich J.K., Huang K., Sun Q., Bukowski R., Bell J.T., Spector T.D., Keinan A., Ley R.E., Gevers D., Clark A.G. (2015) Host genetic variation impacts microbiome composition across human body sites. Genome Biol, 16, 191. [CrossRef] [PubMed] [Google Scholar]
  • Bunker J.J., Flynn T.M., Koval J.C., Shaw D.G., Meisel M., McDonald B.D., Ishizuka I.E., Dent A.L., Wilson P.C., Jabri B., Antonopoulos D.A., Bendelac A. (2015) Innate and adaptive humoral responses coat distinct commensal bacteria with immunoglobulin A. Immunity, 43, 541–553. [CrossRef] [PubMed] [Google Scholar]
  • Chaston J.M., Dobson A.J., Newell P.D., Douglas A.E. (2016) Host genetic control of the microbiota mediates the drosophila nutritional phenotype. Appl Environ Microbiol, 82, 671–679. [Google Scholar]
  • Claesson M.J., Jeffery I.B., Conde S., Power S.E., O'Connor E.M., Cusack S., Harris H.M., Coakley M., Lakshminarayanan B., O'Sullivan O., Fitzgerald G.F., Deane J., O'Connor M., Harnedy N., O'Connor K., O'Mahony D., van Sinderen D., Wallace M., Brennan L., Stanton C., Marchesi J.R., Fitzgerald A.P., Shanahan F., Hill C., Ross R.P., O'Toole P.W. (2012) Gut microbiota composition correlates with diet and health in the elderly. Nature, 488, 178–184. [CrossRef] [PubMed] [Google Scholar]
  • Cotillard A., Kennedy S.P., Kong L.C., Prifti E., Pons N., Le Chatelier E., Almeida M., Quinquis B., Levenez F., Galleron N., Gougis S., Rizkalla S., Batto J.M., Renault P., A.N.R MicroObes consortium, Doré J., Zucker J.D., Clément K., Ehrlich S.D. (2013) Dietary intervention impact on gut microbial gene richness. Nature, 500, 585–588. [CrossRef] [PubMed] [Google Scholar]
  • Cullender T.C., Chassaing B., Janzon A., Kumar K., Muller C.E., Werner J.J., Angenent L.T., Bell M.E., Hay A.G., Peterson D.A., Walter J., Vijay-Kumar M., Gewirtz A.T., Ley R.E. (2013) Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut. Cell Host Microbe, 14, 571–581. [CrossRef] [PubMed] [Google Scholar]
  • D’Auria G., Peris-Bondia F., Dzunkova M., Mira A., Collado M.C., Latorre A., Moya A. (2013) Active and secreted IgA-coated bacterial fractions from the human gut reveal an under-represented microbiote core. Sci Rep, 3, 3515. [CrossRef] [PubMed] [Google Scholar]
  • Davenport E.R., Cusanovich D.A., Michelini K., Michelini K., Barreiro L.B., Ober C., Gilad Y. (2015) Genome-wide association studies of the human gut microbiota. PLoS One, 10, e0140301 [CrossRef] [PubMed] [Google Scholar]
  • Forslund K., Hildebrand F., Nielsen T., Falony G., Le Chatelier E., Sunagawa S., Prifti E., Vieira-Silva S., Gudmundsdottir V., Krogh Pedersen H., Arumugam M., Kristiansen K., Voigt A.Y., Vestergaard H., Hercog R., Igor Costea P., Kultima J.R., Li J., Jørgensen T., Levenez F., Doré J., MetaHIT consortium, Nielsen H.B., Brunak S., Raes J., Hansen T., Wang J., Ehrlich S.D., Bork P., Pedersen O. (2015) Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature, 528, 262–266. [CrossRef] [PubMed] [Google Scholar]
  • Glocker E.O., Hennigs A., Nabavi M., Schäffer A.A., Woellner C., Salzer U., Pfeifer D., Veelken H., Warnatz K., Tahami F., Jamal S., Manguiat A., Rezaei N., Amirzargar A.A., Plebani A., Hannesschläger N., Gross O., Ruland J., Grimbacher B.A. (2009) Homozygous C.A.RD9 mutation in a family with susceptibility to fungal infections. N Engl J Med, 361, 1727-1735. [CrossRef] [PubMed] [Google Scholar]
  • Goodrich J.K., Davenport E.R., Beaumont M., Jackson M.A., Knight R., Ober C., Spector T.D., Bell J.T., Clark A.G., Ley R.E. (2016) Genetic determinants of the gut microbiome in U.K. twins. Cell Host Microbe, 19, 731–743. [CrossRef] [PubMed] [Google Scholar]
  • Goodrich J.K., Waters J.L., Poole A.C., Sutter J.L., Koren O., Blekhman R., Beaumont M., Van Treuren W., Knight R., Bell J.T., Spector T.D., Clark A.G., Ley R.E. (2014) Human genetics shape the gut microbiome. Cell, 159, 789–799. [CrossRef] [PubMed] [Google Scholar]
  • Horton M.W., Bodenhausen N., Beilsmith K., Meng D., Muegge B.D., Subramanian S., Vetter M.M., Vilhjálmsson B.J., Nordborg M., Gordon J.I., Bergelson J. (2014) Genome-wide association study of Arabidopsis thaliana leaf microbial community. Nat Commun, 5, 320. [Google Scholar]
  • Hov J.R., Zhong H., Qin B., Anmarkrud J.A., Holm K., Franke A., Lie B.A., Karlsen T.H. (2015) The influence of the autoimmunity-associated ancestral HLA haplotype AH8.1 on the human gut microbiota : a crosssectional study. PLoS One, 10, e0133804. [CrossRef] [PubMed] [Google Scholar]
  • Hua X., Goedert J.J., Pu A., Yu G., Shi J. (2016) Allergy associations with the adult fecal microbiota : analysis of the American Gut Project. EBioMedicine, 3, 172–179. [CrossRef] [PubMed] [Google Scholar]
  • Kamada N., Seo S.U., Chen G.Y., Nunez G. (2013) Role of the gut microbiota in immunity and inflammatory disease. Nat Rev Immunol, 13, 321–335. [CrossRef] [PubMed] [Google Scholar]
  • Kau A.L., Planer J.D., Liu J., Rao S., Yatsunenko T., Trehan I., Manary M.J., Liu T.C., Stappenbeck T.S., Maleta K.M., Ashorn P., Dewey K.G., Houpt E.R., Hsieh C.S., Gordon J.I. (2015) Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce dietdependent enteropathy. Sci Transl Med, 7, 276ra224. [Google Scholar]
  • Kostic A.D., Howitt M.R., Garrett W.S. (2013) Exploring host-microbiota interactions in animal models and humans. Genes Dev, 27, 701–718. [CrossRef] [PubMed] [Google Scholar]
  • Krzywinski M., Schein J., Birol I., Connors J., Gascoyne R., Horsman D., Jones S.J., Marra M.A. (2009) Circos : an information aesthetic for comparative genomics. Genome Res, 19, 1639–1645. [Google Scholar]
  • Kubinak J.L., Petersen C., Stephens W.Z., Soto R., Bake E., O'Connell R.M., Round J.L. (2015) MyD88 signaling in T cells directs IgA-mediated control of the microbiota to promote health. Cell Host Microbe, 17, 153–163. [CrossRef] [PubMed] [Google Scholar]
  • Lamas B., Richard M.L., Leducq V., Pham H.P., Michel M.L., Da Costa G., Bridonneau C., Jégou S., Hoffmann T.W., Natividad J.M., Brot L., Taleb S., Couturier-Maillard A., Nion-Larmurier I., Merabtene F., Seksik P., Bourrier A., Cosnes J., Ryffel B., Beaugerie L., Launay J.M., Langella P., Xavier R.J., Sokol H. (2016) CARD9 impacts colitis by altering gutmicrobiota metabolism of tryptophan into aryl hydrocarbon receptor ligands. Nat Med, 22, 598–605. [CrossRef] [PubMed] [Google Scholar]
  • Lavasani S., Dzhambazov B., Nouri M., Fåk F., Buske S., Molin G., Thorlacius H., Alenfall J., Jeppsson B., Weström B. (2010) A novel probiotic mixture exerts a therapeutic effect on experimental autoimmune encephalomyelitis mediated by IL-10 producing regulatory T cells. PLoS One, 5, e9009. [CrossRef] [PubMed] [Google Scholar]
  • Liang X., Bushman F.D., FitzGerald G.A. (2015) Rhythmicity of the intestinal microbiote is regulated by gender and the host circadian clock. Proc Natl Acad Sci USA, 112, 10479–10484. [CrossRef] [Google Scholar]
  • Lim M.Y., Yoon H.S., Rho M., Sung J., Song Y.M., Lee K., Ko G. (2016a) Analysis of the association between host genetics, smoking, and sputum microbiota in healthy humans. Sci Rep, 6, 23745. [CrossRef] [PubMed] [Google Scholar]
  • Lim M.Y., You H.J., Yoon H.S., Kwon B., Lee J.Y., Lee S., Song Y.M., Lee K., Sung J., Ko G. (2016b) The effect of heritability and host genetics on the gut microbiota and metabolic syndrome. Gut, doi :10.1136/gutjnl-2015-311326. [Google Scholar]
  • Moor K., Fadlallah J., Toska A., Sterlin D., Balmer M.L., Macpherson A.J., Gorochov G., Larsen M., Slack E. (2016) Analysis of bacterial-surface-specific antibodies in body fluids using bacterial flow cytometry. Nat Protoc, 11, 1531–1553. [CrossRef] [PubMed] [Google Scholar]
  • Netea M.G., Wijmenga C., O'Neill L.A. (2012) Genetic variation in Toll-like receptorsand disease susceptibility. Nat Immunol, 13, 535–542. [CrossRef] [PubMed] [Google Scholar]
  • Ochoa-Repáraz J., Mielcarz D.W., Ditrio L.E., Burroughs A.R., Begum-Haque S., Dasgupta S., Kasper D.L., Kasper L.H. (2010) Central nervous system demyelinating disease protection by the human commensal Bacteroides fragilis depends on polysaccharide A expression. J Immunol, 185, 4101–4108. [CrossRef] [PubMed] [Google Scholar]
  • Olivares M., Neef A., Castillejo G., Palma G.D., Varea V., Capilla A., Palau F., Nova E., Marcos A., Polanco I., Ribes-Koninckx C., Ortigosa L., Izquierdo L., Sanz Y. (2015) The HLA-DQ2 genotype selects for early intestinal microbiota composition in infants at high risk of developing coeliac disease. Gut, 64, 406–417. [CrossRef] [PubMed] [Google Scholar]
  • Org E., Parks B.W., Joo J.W., Emert B., Schwartzman W., Kang E.Y., Mehrabian M., Pan C., Knight R., Gunsalus R., Drake T.A., Eskin E., Lusis A.J. (2015) Genetic and environmental control of host-gut microbiota interactions. Genome Res, 25, 1558–1569. [CrossRef] [PubMed] [Google Scholar]
  • Ou J., Carbonero F., Zoetendal E.G., DeLany J.P., Wang M., Newton K., Gaskins H.R., O'Keefe S.J. (2013) Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans. Am J Clin Nutr, 98, 111–120. [CrossRef] [PubMed] [Google Scholar]
  • Palm N.W., de Zoete M.R., Cullen T.W., Barry N.A., Stefanowski J., Hao L., Degnan P.H., Hu J., Peter I., Zhang W., Ruggiero E., Cho J.H., Goodman A.L., Flavell R.A. (2014) Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease. Cell, 158, 1000-1010. [CrossRef] [PubMed] [Google Scholar]
  • Planer J.D., Peng Y., Kau A.L., Blanton L.V., Ndao I.M., Tarr P.I., Warner B.B., Gordon J.I. (2016) Development of the gut microbiota andmucosal IgA responses in twins and gnotobiotic mice. Nature, 534, 263–266. [CrossRef] [PubMed] [Google Scholar]
  • Portelli M.A., Hodge E., Sayers I. (2015) Genetic risk factors for the development of allergic disease identified by genome-wide association. Clin Exp Allergy, 45, 21–31. [CrossRef] [PubMed] [Google Scholar]
  • Qin J., Li Y., Cai Z., Li S., Zhu J., Zhang F., Liang S., Zhang W., Guan Y., Shen D., Peng Y., Zhang D., Jie Z., Wu W., Qin Y., Xue W., Li J., Han L., Lu D., Wu P., Dai Y., Sun X., Li Z., Tang A., Zhong S., Li X., Chen W., Xu R., Wang M., Feng Q., Gong M., Yu J., Zhang Y., Zhang M., Hansen T., Sanchez G., Raes J., Falony G., Okuda S., Almeida M., Le Chatelier E., Renault P., Pons N., Batto J.M., Zhang Z., Chen H., Yang R., Zheng W., Li S., Yang H., Wang J., Ehrlich S.D., Nielsen R., Pedersen O., Kristiansen K., Wang J. (2012) A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature, 490, 55–60. [CrossRef] [PubMed] [Google Scholar]
  • Rochereau N., Drocourt D., Pérouzel E., Pavot V., Redelinghuys P., Brown G.D., Tiraby G., Roblin X., Verrier B., Génin C., Corthésy B., Paul S. (2013) Dectin-1 is essential for reverse transcytosis of glycosylated SIgA-antigen complexes by intestinal M cells. PLoS Biol, 11, e1001658. [CrossRef] [PubMed] [Google Scholar]
  • Round J.L., Mazmanian S.K. (2009) The gut microbiota shapes intestinal immune responses during health and disease. Nat Rev Immunol, 9, 313–323. [CrossRef] [PubMed] [Google Scholar]
  • Round J.L., Mazmanian S.K. (2010) Inducible Foxp3b regulatory T-cell development by a commensal bacterium of the intestinal microbiota. Proc Natl Acad Sci USA, 107, 12204–12209. [CrossRef] [Google Scholar]
  • Si J., Lee S., Park J.M., Sung J., Ko G. (2015) Genetic associations and shared environmentaleffects on the skin microbiome of Korean twins. BMC Genomics, 16, 992. [CrossRef] [PubMed] [Google Scholar]
  • van de Merwe J.P., Stegeman J.H., Hazenberg M.P. (1983) The resident faecal flora is determined by genetic characteristics of the host. Implications for Crohn’s disease? Antonie Van Leeuwenhoek, 49, 119-124. [CrossRef] [PubMed] [Google Scholar]
  • Woon P.Y., Kaisaki P.J., Braganca J., Bihoreau M.T., Levy J.C., Farrall M., Gauguier D. (2007) Aryl hydrocarbon receptor nuclear translocator-like (BMAL1) is associated with susceptibility to hypertension and type 2 diabetes. Proc Natl Acad Sci USA, 104, 14412–14417. [CrossRef] [Google Scholar]
  • Yatsunenko T., Rey F.E., Manary M.J., Trehan I., Dominguez-Bello M.G., Contreras M., Magris M., Hidalgo G., Baldassano R.N., Anokhin A.P., Heath A.C., Warner B., Reeder J., Kuczynski J., Caporaso J.G., Lozupone C.A., Lauber C., Clemente J.C., Knights D., Knight R., Gordon J.I. (2012) Human gut microbiome viewed across age and geography. Nature, 486, 222–227. [CrossRef] [PubMed] [Google Scholar]

Les statistiques affichées correspondent au cumul d'une part des vues des résumés de l'article et d'autre part des vues et téléchargements de l'article plein-texte (PDF, Full-HTML, ePub... selon les formats disponibles) sur la platefome Vision4Press.

Les statistiques sont disponibles avec un délai de 48 à 96 heures et sont mises à jour quotidiennement en semaine.

Le chargement des statistiques peut être long.